X-Files (The): Season 1 (1993-1994)

The X-Files: Season 1
Episode 01 - Pilot
V1-D1T2 - Scully to DC / Scully Meets Mulder (1:21)
V4-D1T1/TL3C - Night Forest (1:30)*
V4-D1T2 - Forest Search (1:53)
V1-D1T3/TL3B - The Close Encounter (2:16)
D - Billy's Testimony (:25)
V1-D1T4 - Scully and FBI Goon (0:35)
V1-D1T5/TL3A - FBI Secret Vaults (1:14)
D - End Credits (Billy's Testimony) (:25)

Episode 02 - Deep Throat
V1-D1T1 - Main Title (1st Season) (:48)
V3-D1T2 - UFO Kids (2:15)
V3-D1T3 - UFO Technology (2:15)
V3-D1T4 - Confrontation (2:09)
V3-D1T5 - Trek to Yellow Base (2:53)
V3-D1T6 - Eye Poke (1:06)
V3-D1T7 - Transfer and Release (3:26)
V4-D1T3 - Mr. Deepthroat (3:51)

Episode 03 - Squeeze
V1-D1T6 - Hidden Away (1:38)
V1-D1T7 - Slimed (0:41)
V1-D1T8 - Cuffed And Tubbed (2:16)

Episode 04 - Conduit
V3-D1T8 - Shaky Ground (2:13)*
V3-D1T9 - Weather Balloons (1:00)
V3-D1T10 - Kevin, the NSA Menace (1:59)
V3-D1T11 - Switching Channels / Deciphering (1:11)
V3-D1T12 - Shallow Grave (2:03)*
V3-D1T13/TL10 - Another X-File (1:48)

Episode 05 - The Jersey Devil
V4-D1T4 - The Search (2:30)
V4-D1T5 - Pursued And Destroyed (2:55)
V4-D1T6 - Detective Schmuck (1:07)

Episode 06 - Shadows
V4-D1T7 - Quotes From Ben / ATM (2:31)
V4-D1T8 - Red Light Montage (4:18)

Episode 07 - Ghost in the Machine
TL11 - Dubitatio (:00-2:09) [Rename to "Reaching Out"]

Episode 08 - Ice
V4-D1T9 - Suicide (3:22)
V4-D1T10 - Nancy Gets Wormed (2:20)

Episode 09 - Space
V3-D1T14 - The Young Col. Belt (1:23)
V3-D1T15 - Lift Off (4:00)
V3-D1T16 - Car Crash (:57)*
V3-D1T17 - Digital Data Banks (2:09)
V3-D1T18 - Aerial Burial (1:17)

Episode 10 - Fallen Angel
V1-D1T9 - On The Waterfront / Suspended Max (6:11)

Episode 11 - Eve
V2-D1T2 - Swinging Dead Daddy (1:29)
V2-D1T3 - Meet Your Clone (1:21)
V2-D1T4 - Attached (0:56)

Episode 14 - Gender Bender
V3-D1T19 - Sex Kills (1:32)
V3-D1T20 - Arrival in Town (1:18)
V3-D1T21 - Intro to Kindred, Part 2 (3:19)
V3-D1T22 - Finding Kindred (3:24)
V3-D1T23 - I Called Him Marty (2:12)
V3-D1T24 - Indian Prince-(ss) (2:22)
TL7 - Mercutura (3:23) [Rename to "The Day is Coming"]

Episode 16 - Young at Heart
V2-D1T5 - The Eyes Don't Lie (1:48)
V2-D1T6 - Ain't Dead Yet (4:05)
V2-D1T7 - Youth (3:39)
V2-D1T8 - Shot in the Crowd (2:32)

Episode 17 - E.B.E
V2-D1T9 - Swimming with Sharks (5:17)
V2-D1T10 - Here We Go (2:46)

Episode 19 - Shapes
TL16 - Memoria (2:02) [Rename to "Night Attack"]

Episode 20 - Darkness Falls
V4-D1T11 - Woke Up Hungry (3:04)
V4-D1T12 - Bug Tales (2:13)
V4-D1T13 - Buttoning Up (2:10)
V4-D1T14 - Not An Option (:31)

Episode 21 - Tooms
V2-D1T11 - Druid Hill (2:20)
V2-D1T12 - Rats and Babes (2:01)
V2-D1T13 - Toilet Tooms (5:52)

Episode 22 - Born Again
V2-D1T14 - Psycho-Electric Attack (6:30)

Episode 23 - Roland
V1-D1T10/TL8B - Sweeper (1:47)
TL8 - Lamenta (:00-:25) [Rename to "Meeting Roland"]
V1-D1T11 - Out The Window (1:29)*
V1-D1T12 - Ramblin' Roland (2:05)

Episode 24 - The Erlenmeyer Flask
V1-D1T13 - Green Goo Chase (2:12)
TL18 - Fides Fragilis (1:35) [Rename to "1056"]
V1-D1T14 - The Wells Brain (5:17)

Bonus Track:
TL2 - Materia Primoris: The X-Files Theme (Main Title) (3:22)

Main Titles:
V1-D1T1 - Main Title (1st Season) (:48)
V2-D1T1/V3-D1T1/V4-D2T2 - Main Title (1st Season) (:49) [Alternate Intro]
V1-D2T1/V1-D3T1 - Main Title (Short) (:37)
V2-D2T1 - Main Title (2nd Season) (:51)
V1-D4T1 - Main Title (7th Season) (:48)
V2-D3T1/V2-D4T1 - Main Title (7th Season) (:38)
V1-D4T24 - Main Title (Remix) (3:25)

End Credits:
V2-D4T16 - End Credits (1st Season) (:30) [Longer fade out]
V3-D4T20/V4-D4T24/V1-D1T29 - End Credits (1st Season) (:28)
V2-D2T20 - End Credits (Extended #1) (:35)
V1-D3T22 - End Credits (Extended #2) (1:31)
V1-D2T18 - End Credits (Extended Remix) (2:11)
V1-D4T25/V2-D4T17/V3-D4T21/V4-D4T25 - I Made This / 20th Century Fox Fanfare (:09)

* = Partially or Completely Unused

D = DVD/Blu-ray
TL = The Truth And The Light: Music From The X-Files
V1 = Volume 1 (4 Discs)
V2 = Volume 2 (4 Discs)
V3 = Volume 3 (4 Discs)
V4 = Volume 4 (4 Discs)

Notes: The main titles and end credits are shown separately to identify which tracks are identical on the different releases. Source music has not been added to the episodes unless it has a significant link to the plot. Some of the music from The Truth And The Light has narration or other sounds not present in the show. The original theme music lasted 45 seconds; it was heard in Seasons 1 through 5; the main title sequence was shortened to 30 seconds beginning with the fifth season's 14th episode. Season 8 resumed the use of the full 45-second title, while Seasons 7 and 9 alternated between the two versions.

X-Files (The): The Event Series (Season 10) (2016)

The X-Files: The Event Series (Season 10)
Episode 01 - My Struggle
ES-D1T1 - Prologue (2:59)
ES-D1T2 - Main Title (Season 9) (:36)
ES-D1T3 - Ride to Roswell (2:09)
ES-D1T4 - Call to Mulde (1:49)
ES-D1T5 - Sveta (4:31)
ES-D1T6 - Sveta Exam (1:47)
ES-D1T7 - Alien Replica Vehicle / Element 115 (3:09)
ES-D1T8 - Lab Labors (2:16)
ES-D1T9 - Sveta’s Story (3:17)
ES-D1T10 - Mulder’s Office (1:58)
ES-D1T11 - Deep Throat (2:35)
ES-D1T12 - Home Fire (1:55)
ES-D1T13 - Conspiracy Montage (5:14)
ES-D1T14 - Sveta Confesses (1:48)
ES-D1T15 - Parking Garage (2:26)
ES-D1T16 - Sveta Gets Zapped (1:18)
ES-D1T17 - Smoking Man (:44)
ES-D2T23 - The X-Files End Credits (New Orbit) (:35)
ES-D2T24 - I Made This / 20th Century Fox Fanfare (:08)

Episode 02 - Founders Mutation
ES-D1T18 - Insecure Insecurity (2:30)
BJ1 - I Wanna Know - Big Jack Johnson (3:32)
GB6 - On My Mind - George Byrne (4:49)
ES-D1T19 - Hand Message (3:33)
ES-D1T20 - Pull the Thread / Semi-Alien Boy (10:04)
ES-D1T21 - Capsules (5:01)
ES-D1T22 - Aquaiescent (1:46)
ES-D1T23 - A Mother Never Forgets (2:23)
ES-D1T24 - The Farm House / Catching Kyle (3:32)
ES-D1T25 - The Real Molly (2:46)
ES-D1T26 - Mulder’s Memories (2:47)

Episode 03 - Mulder & Scully Meet the Were-Monster
ES-D2T25 - Mulder And Scully Meet The Were-Monster (Suite) (2:51)

Episode 04 - Home Again
ES-D2T1 - City Shower Services (1:15)
ES-D2T2 - No Prints / The Call (2:17)
ES-D2T3 - Extubation (:37)
PC1 - Downtown - Petula Clark (3:07)
ES-D2T4 - Remorse (1:41)
ES-D2T5 - Sub-Urban (3:05)
ES-D2T6 - Tulku (3:33)
ES-D2T7 - More Remorse (2:20)

Episode 05 - Babylon
ES-D2T8 - Prayer (1:13)
SC - Urban Islam - Audio Android (2:33)
J6 - My Give a Damn's Busted - Jo Dee Messina (3:19)
HA2 - Song 'Tonight's Lovely' - Hussein Al A'dhami (4:05)
ES-D2T9 - Einstein / Miller (2:01)
ES-D2T10 - Mugwump (5:02)
ES-D2T11 - Evacuation (3:25)
CU12 - Somethin' Bad - Miranda Lambert with Carrie Underwood (2:49)
BC1 - Achy Breaky Heart - Billy Ray Cyrus (3:24)
TA1 - Honky Tonk Badonkadonk - Trace Adkins (4:00)
TW1 - Misery Is the River of the World - Tom Waits (4:25)
ES-D2T12 - Ummu (2:48)
ES-D2T13 - Motel (1:35)
RS1 - Secret Heart - Ron Sexsmith (3:15)
TL5 - Ho Hey - The Lumineers (2:43)
ES-D2T14 - Walk With Me (1:24)

Episode 06 - My Struggle II
ES-D2T15 - Recap (1:31)
ES-D2T16 - Scully’s Story (2:27)
V1-D1T1 - Main Title (1st Season) (:48)
ES-D2T17 - Fed Ford / Alien American DNA (4:35)
ES-D2T18 - Vaccine Alienation / One-Class Infection (2:27)
ES-D2T19 - Smokin’ God (6:58)
ES-D2T20 - The Spartan Virus (7:48)
ES-D2T21 - Crispr Cas9 (6:33)
ES-D2T22 - William Is Out There (4:32)
ES-D2T23 - The X-Files End Credits (New Orbit) (:35)
ES-D2T24 - I Made This / 20th Century Fox Fanfare (:08)

BC = Millennium Collection: 20th Century Masters
BJ = All the Way Back
CU = Platinum
ES = Score
GB = George Byrne
HA = Maqams in Divine Enchantment
J = Delicious Surprise
PC = The Ultimate Petula Clark
RS = Ron Sexsmith
SC = JPJ Productions (Soundcloud)
TA = The Definitive Greatest Hits: Til The Last Shot's Fired
TL = The Lumineers
TW = Blood Money
V1 = The X-Files: Volume 1

From the liner notes: The original theme music lasted 45 seconds; it was heard in Seasons 1 through 5; the main title sequence was shortened to 30 seconds beginning with the fifth season's 14th episode.  Season 8 resumed the use of the full 45-second title, while Seasons 7 and 9 alternated between the two versions.  Season 10 has reprised the original main title as it appeared in the original series.  Episodes 1-5 used the 30-second version while the season's final sixth episode reprised the original 45-second arrangement just as it had been heard in the series' very first episode on Sept. 10, 1993.

X-Files (The): Fight the Future (1998)

The X-Files: Fight the Future
L1/S1 - Threnody in “X” (:00-:40) [Rename to "Main Title"]
L2/S2 - B.C. Blood (2:28)*
L3/S3 - Goop (4:20)
L4/S4 - Soda Pop (4:46)
U - Hole in the Wall (:27)
L5 - Quitting (:53)
A11 - Crystal Ship - The Doors and X (2:19)
L6/S5 - Already Dead (1:43)
L7/S6 - Cave Base (1:32)
U - Roadside Memorial (1:36)
L8/S7 - Remnants (2:13)
U - Man in the Shadows (:36)
L10/S8 - Fossil Swings (:59)
L9/S9 - Plague (3:24)
L11/S10 - Goodbye Bronschweig (2:41)
L12/S11 - A Call to Arms (:59)
L13 - Elders / Crossroads (2:35)
L14/S13 - Corn Hives (3:06)
L15/S14 - Corn Copters (2:36)
U - Bee Collar (:10)
L16/S15 - Out of Luck (1:01)
L17/S16 - Stung Kissing / Cargo Hold (4:13)
L18/S17 - Come and Gone (5:29)
L19/S18 - Trust No One (2:53)
L20/S19 - Ice Base (1:35)*
L21 - Space Hole (2:14)
L22/S20 - Mind Games (3:53)
L23/S21 - Nightmare (2:45)*
L24/S22 - Pod Monster Suite (5:23)*
L25/S23 - Crater Hug (2:04)
L26/S24 - Facts (2:35)
V4-D3T12 - Smoking Telegram (3:12)
A13 - Teotihuacan - Noel Gallagher (7:06)
A3 - Walking After You - Foo Fighters (4:07)

Bonus Tracks:
L1/S1 - Threnody in “X” (:40-End) [Rename to "Crossroads (Alternate)"]
L27 - Plague (Alternate Segment) (1:29)
L28 - Crossroads (Album Version) (2:20)

Unused Songs:
A1 - One - Filter (4:40)
A2 - Flower Man - Tonic (2:56)
A4 - Beacon Light - Ween (4:01)
A5 - Invisible Sun - Sting and Aswad (4:08)
A6 - Deuce - The Cardigans (3:32)
A7 - One More Murder - Better Than Ezra (4:38)
A8 - More Than This - The Cure (5:10)
A9 - Hunter - Björk (3:30)
A10 - 16 Horses - Soul Coughing (2:37)
A12 - Black - Sarah McLachlan (4:29)
A14 - The X-Files Theme / The Truth Revealed - The Dust Brothers / Chris Carter (14:13)

* = Partially or completely unused

A = Soundtrack
L = La La Land Expanded Release (2014)
S = Score
U = Unreleased
V4-D3 = The X-Files: Volume 4 (Disc 3)

Smallville (2001-2011)

Smallville: Season 1
Episode 02 - Metamorphosis
D1T1 - Grow Up Superboy (1:43)
D1T2 - Webmaster (1:10)

Episode 08 - Jitters
D2T1 - Don't Come Knockin' (1:39)

Episode 10 - Shimmer
D1T3 - The Setup (1:59)
D2T2 - Mixed Intentions (1:16)

Episode 11 - Hug
D2T3 - Teaser (2:32)

Episode 21 - Tempest
D1T5 - Burn Baby Burn (3:31)

Season 2
Episode 05 - Nocturne
D2T16 - Father Knows Best (2:38)

Episode 08 - Ryan
D2T4 - Warrior Angel (2:00)

Episode 09 - Dichotic
D2T5 - House Rules (2:24)

Episode 14 - Rush
D2T6 - Secrets Revealed (3:56)

Episode 15 - Prodigal
D1T4 - Where Am I (2:41)

Episode 23 - Calling
D2T7 - Branded (2:50)

Season 3
Episode 01 - Exile
D2T8 - Bug Eater (1:27)

Episode 03 - Extinction
D1T6 - Freaks (5:18)

Episode 07 - Magnetic
D2T9 - Ferris Wheel (4:01)

Episode 22 - Covenant
D2T10 - I'm Ready (1:49)

Season 4
Episode 01 - Crusade
D2T11 - Blood Cleansing (2:03)

Episode 18 - Spirit
D2T12 - Transformation Chain (1:20)

Episode 22 - Commencement
D1T7 - The Final Stone (4:09)

Season 5
Episode 01 - Arrival
D1T8 - Their Only Poison (2:12)

Episode 03 - Hidden
D2T13 - Clark is Gone (2:48)

Episode 09 - Lexmas
D2T17 - Lexmas (1:41)

Episode 16 - Hypnotic
D2T14 - Simone (4:04)

Episode 18 - Fragile
D1T9 - Demon Dad (3:03)

Season 6
Episode 01 - Zod
D1T10 - Crash Landing (4:16)

Episode 05 - Reunion
D2T15 - Start Digging (2:24)

Episode 07 - Rage
D1T12 - Green Arrow (1:43)

Episode 19 - Nemesis
D1T11 - Rigged to Blow (3:03)

Season 7
Episode 01 - Bizarro
D2T18 - Bizarro (1:27)
D1T13 - Defeating Bizarro (2:41)

Episode 20 - Arctic
D1T14 - The Fortress Falls (1:38)

Season 8
Episode 05 - Committed
D1T15 - Lois' Waltz (2:04)

Episode 10 - Bride
D2T20 - Dance (1:48)

Episode 14 - Requiem
D2T19 - One Last Time (4:42)

Episode 17 - Hex
D1T16 - Zatanna (2:02)

Episode 19 - Stiletto
D2T21 - The First to Know (3:29)

Season 9
Episode 03 - Rabid
D1T17 - In the Rain (1:18)

Episode 09 - Pandora
D1T18 - Pandora's Kiss (1:01)

Episode 11 - Absolute Justice
D1T19 - Hall of Heros (2:27)

Episode 17 - Upgrade
D2T22 - Oliver Runs (1:42)

Season 10
Episode 02 - Shield
D2T27 - Hawkman in the Desert (2:23)
D2T28 - Meet Cat Grant (2:14)

Episode 03 - Supergirl
D1T20 - Supergirl Arrives (:53)

Episode 05 - Isis
D2T29 - The Amulet (4:20)
D1T21 - Clark Tells Lois (2:30)

Episode 07 - Ambush
D2T23 - The Village (2:33)

Episode 11 - Icarus
D1T22 - The Proposal (3:47)

Episode 12 - Collateral
D1T23 - To Fly (1:54)

Episode 14 - Masquerade
D1T24 - Disguise Needed (3:31)
D2T25 - Hooded Prototype (1:57)

Episode 15 - Fortune
D1T25 - A Lemur in the Room (1:19)

Episode 17 - Kent
D1T26 - Booster Gold (1:50)

Episode 18 - Booster
D2T24 - Jonathan Kent (1:12)

Episode 19 - Dominion
D1T27 - Zod's Demise (2:09)

Episode 20 - Prophecy
D2T26 - Lois is Super (4:11)

Episode 21 - Finale
D1T28 - Trials (3:09)

D1 = Score (iTunes Version) / Deluxe Edition (Disc 1)
D2 = Score (Deluxe Edition)

Originally posted by adamtrons at Film Score Monthly Message Board. Corrections made by Daniel.

X-Files (The): I Want to Believe (2008)

The X-Files: I Want to Believe (Film Version)
IS1 - Twentieth Century Fox Fanfare (:24)
IS2 - Moonrise (:00-:08.7) [Combine]
S1 - Moonrise (:00-1:37) [Combine]
IS2 - Moonrise (1:37-2:32) [Overlap S1 at 1:26 and crossfade]
S1 - Moonrise (1:37-End) [Combine and retain the name]
O1 - Ooh La La - Deborah Poppink (3:26)
S2 - No Cures / Looking For Fox (:00-1:10) [Combine]
S4 - Father Joe (:32-End) [Combine and retain the name "No Cures / Looking for Fox"]
IS4 - The Trip to D.C. (:00-:18.7) [Combine]
S3 - The Trip to DC (:49-End) [Combine]
IS4 - The Trip to D.C. (:00-:18.7) [Combine and retain the name]
T3 - Movin' On Up - Jeff Barry and Ja'net Dubois (1:09)
IS5 - Father Joe (1:16)
IS6 - Scully Scare (:24) [Rename to "Waiting Outside"]
IS7 - Sister (1:20)
IS8 - Crime Scene (1:45)
IS9 - Father's Eyes (1:07)
IS10 - Ybara the Strange (1:01)
S20 - Home Again (:53-1:43) [Rename to "Tears"]~
IS11 - Waterboard (:55)
J3 - Memories - Jamison Young (5:02)
IS12 - Icy Road (1:25)
IS13 - Can't Sleep / Ice Field (2:40)
S8 - March and Dig / Girl in the Box (:29-:45) [Combine]
S8 - March and Dig / Girl in the Box (:54-End) [Combine and retain the name]
IS15 - What if You're Wrong (:00-1:35.8) [Combine]
S9 - A Higher Conscious (1:55.2-End) [Combine and retain the name]
IS17 - The Surgery (2:12)
IS18 - Don't Give Up (1:25)
IS19 - Paperwork (1:32)
S12 - Seizure / Attempted Escape (1:54) [Combine]
IS20 - Seizure / Attempted Escape (1:51.6-End) [ [Combine and retain the name]
IS21 - Foot Chase (3:35)
U - Mulder Doubts (1:15)
IS22 - A Higher Conscious (2:36) [Rename to "The Connection"]
IS23 - The Patient (:25)
S14 - Mountain Montage / The Plow (1:44) [Rename to "Mountain Montage / Nutter's Feed"]
IS25 - The Plow (:34.6-End)
S15 - Photo Evidence (2:46)
IS27 - Girl in the Box II (:54) [Rename to "Girl Out of the Box"]
IS28 - The Preparation Pt I (:57)
IS29 - The Preparation Pt II (:00-1:28.5) [Combine]
S16 - The Preparation (1:35)  [Combine and retain the name "Preparation Pt II"]
S17 - Tranquilized (1:47)
S18 - The Axe Post (2:53) [Combine]
IS31 - The Axe Post (2:45-End) [Combine and retain the name]
S19 - Box Them (1:42)
S20 - Home Again (4:17)
IS34 - End Titles (Variations on a Theme / Broken) - UNKLE and Gavin Clark (5:31)

~ = From Director's Cut

IS = Isolated Score
O = Ooh La La (Single)
J = Shifting Sands of a Blue Car
S = Score
T = Television's Greatest Hits, Vol. 3: 70's and 80's
U = Unreleased

Note: This version includes the isolated score from the BluRay.  Commercial tracks have been included to lessen sound effects, replace tracked music or when the mix is different.

Millennium (1996-1999)

Millennium
Season 1 - Episode 01 - Pilot
V1-D1T2/I2/P2/B2 - Big Yellow House (:00-:05) [Rename to "Opening"]
V1-D1T1/P3/B3 - Main Title A (:54)
V1-D1T2/I2/P2/B2 - Big Yellow House (:05-End)
V1-D1T3/I3/P4/B4 - Rain (3:29)
V1-D1T4/I4/P5/B5 - Exterminated (4:58)

Episode 02 - Gehenna
B6/P6 - Shorter Nights and Ashes (Gehenna) (:00-:02) [Rename to "Opening"]
B6/P6 - Shorter Nights and Ashes (Gehenna) (1:02-End) [Rename to "Create Desire"]
B6/P6 - Shorter Nights and Ashes (Gehenna) (:02-1:02) [Rename to "Arriving Home"]
V2-D1T8 - Dylan (4:36)
B7/P7 - Our 21 (Gehenna) (:00-:59.7) [Rename to "Ephesians 6:16"]
V2-D1T9/P7/B7 - Gehenna: Part I (6:43)
V2-D1T10/P8/B8 - Gehenna: Part II (3:05)

Episode 04 - The Judge
V2-D1T11 - Links (2:38)
V2-D1T12 - To the Hogs (6:27)

Episode 07 - Blood Relatives
V1-D1T5/P9/B10 - Mourners / Dragged In (3:24)
B11/P10 - Crossing Guard Finish (Wide Open) (4:51) [Rename to "Tina"]
B9/P11 - Never Stop Looking (Blood Relatives) (1:47) [Rename to "Mrs. Dechant"]

Episode 08 - The Well-Worn Lock
V1-D1T6 - Lock (2:41)
V1-D1T7 - Lock Part Two (:52)

Episode 10 - The Wild and the Innocent
V1-D1T8 - Death Prayer (3:30)*

Episode 13 - Force Majeure
P12 - Weed (:00-:01.7) [Rename to "Opening"]
V2-D1T14 - Hail Lauren (2:10)
V2-D1T15/P12A - Alignment (3:19)
V2-D1T16 - Pugilistic Attitude (1:57)
V2-D1T17/P12B/B12 - All His Children (6:32)

Episode 16 - Covenant
V2-D1T2 - Spinning (3:35)*
V2-D1T3 - Failing at Home (7:13)*

Episode 18 - Lamentation
V2-D1T4/P17/B13 - The Surgeon (3:32)
V2-D1T5/P18A/B14A - Alpine Page (2:17)
V2-D1T6 - Kidney Plate (5:20)
V2-D1T7 - Dude Looks Like A Lady (1:33)
B14B/P18B - Views (Lamentation) (2:10-End) [Rename to "The View"]

Episode 19 - Power, Principalities, Thrones and Dominions
B15/P19 - Fallen Angel (Powers, Principalities, Thrones and Dominions) (1:47) [Rename to "Sammael"]
B21/P20 - Always Someone (Paper Dove) (1:27) [Rename to "Murder in the Park"]
B16/P21 - Enough Love (Powers, Principalities, Thrones and Dominions) (:00-:42) [Rename to "Can’t Sleep"]
V2-D1T18/P21/B22 - The Ghost of Bletch (2:56)
V2-D1T19 - The Razor's Edge (4:49)
V2-D1T20/P22/B16 - A Unique Perspective (1:51)

Episode 21 - Marantha
V1-D1T9/I5/P13/B17 - Chernobyl (3:59)
V1-D1T10/I6/P14/B18 - Yaponchik (:58)
V1-D1T11/I7/P15/B19 - Myth No More / Antichrist (5:06)
V1-D1T12/I8/P16/B20 - Savior (7:47)

Episode 22 - Paper Dove
V1-D1T13 - Crushed Dove (1:56)
V2-D2T19 - End Credits (:37)

Season 2 - Episode 1 - The Beginning and the End
V1-D2T1/I1/P1/B1 - Main Title - Long Version (3:36)
V1-D1T14 - Headlights (2:52)
V1-D1T15 - Check / Get It Back Again (1:38)

Episode 4 - Monster
V1-D1T16 - Henny Penny (1:51)
V1-D1T17 - M-Files / Little Pigs (4:58)

Episode 6 - The Curse of Frank Black
V1-D1T18 - Jack O' Lantern (1:19)
V1-D1T19 - Battery (2:00)
V1-D1T20 - Acts (1:48)
V1-D1T21 - 790 Days (3:58)

Episode 8 - The Hand of Saint Sebastian
V1-D1T22 - Comatose / Origins / Woods (1:22)*

Episode 9 - Jose Chung's Doomsday Defense
V1-D1T24/I10 - Goopy (Alternate) (5:35)*
V1-D1T23/I9 - The Writer (2:52)
V1-D1T25/I11 - Final Chapter (1:39)

Episode 10 - Midnight of the Century
V1-D2T2/I12 - Delete (1:37)
V1-D2T3/I13 - Branches / Angels (4:52)
I14 - Bumper 4M2 (4:27) [Rename to "Reconciliation"]

Episode 12 - Luminary
V2-D2T1 - Stars (1:04)
V2-D2T2 - Journey North (2:08)
V2-D2T3 - Northern Lights (6:47)
V2-D2T4 - Rescue of Ventoux (5:35)

Episode 15 - Owls
V1-D2T4 - Damascus (4:35)
V1-D2T5 - The Subject (3:40)
V1-D2T6 - Aerotech (1:33)

Episode 16 - Roosters
V1-D2T7 - Trail (1:14)

Episode 19 - Anamnesis
V2-D2T8 - The Sermon (4:00)
V2-D2T9 - The Read (3:03)
V2-D2T10 - M. Magdalene (2:21)
V2-D2T11 - The Circle (2:49)
V2-D2T12 - Divine Daughter (9:42)

Episode 21 - Somehow Satan Got Behind Me
V1-D2T8 - Alarm (1:46)
V1-D2T9 - X-Fyles (2:04)*
V1-D2T10 - Sympathy of the... (2:02)

Episode 22 - The Fourth Horseman
V2-D1T13 - The Bleed (3:33)

Episode 23 - The Time Is Now
V1-D2T11/I15 - Hot Birds (1:32)*
V1-D2T12/I16 - The Peter Principle (3:07)
V1-D2T13/I17 - Catherine (2:29)
V1-D1T26/I22/P23 - End Title (:33)

Season 3 - Episode 4 - Closure
V1-D2T14 - Silence is Golden (3:08)
V2-D1T1 - Main Title (:54)
V1-D2T15 - Candy (7:27)

Episode 7 - Through A Glass Darkly
V2-D2T13 - Van Man (3:11)
V2-D2T14 - The Trailer (2:55)
V2-D2T15 - East... West (3:15)
V2-D2T16 - St. Max (7:33)

Episode 9 - Omerta
V1-D2T16/I18 - Santos Elves (3:50)
V1-D2T17/I19 - Unwrapped Gift (2:47)
V1-D2T18 - Love Jordan / Hobbit House (2:19)
V1-D2T19/I20 - The Way It Was (3:53)

Episode 12 - The Sound of Snow
V2-D2T17 - Guilt (1:50)
V2-D2T18 - Can't Let Go (6:42)

Episode 19 - Seven and One
V2-D2T5 - The Secret (4:06)
V2-D2T6 - False Alarm (2:21)
V2-D2T7 - The Light in the Water (8:18)

Episode 22 - Goodbye to All That
V1-D2T20 - Shrapnel (3:53)
V1-D2T21 - Channel 14 (4:14)
V1-D2T22 - Locked Out (1:21)
V1-D2T23/I21 - Drilling (4:51)
V1-D2T24 - End Title (:45)
V2-D2T20 - I Made This / 20th Century Fox Fanfare (:09)

Bonus Track:
V1-D2T25 - Main Title - Vocal Remix (:50)

* = Partially / Completely Unused

B = Bootleg
I = iTunes Release (2003)
P = Composer’s Promo
V1-D1/D2 = Volume I (2 Disc) (2008 & 2015 Releases)
V2-D1/D2 = Volume II (2 Disc) (2015 Release)

Note: Previous track order posted by fommes at http://jwfan.com/forums/.  There are other main/end titles on the bootleg that are a combination of DVD rips that are not listed above.